http://i1326.photobucket.com/albums/...o/IMG_1089.jpg
I posted the pictures on photobucket, this one explains all of them. If you look at the picture for your connector, it is flipped from this one:
http://i1326.photobucket.com/albums/...lugnumbers.jpg
But the wires you are asking about are
16/20 - The red/light green wire traces to the electronic voltage regulator and a fuse for the tachometer. For your setup, neither one applies. The light blue/white wire goes to the same system, different connections. So I guess both wires can be removed since you are using a 3G alternator with an MSD ignition box.
297 - splits into the printed circuit stock voltage regulator and a few other things like wiper and radio...but the aftermarket harness has individual wires for most of what it went to so this can also be omitted. Well, it depends on what options you had on the car that you want to keep. You can see where else it went to here:
http://i1326.photobucket.com/albums/...o/IMG_1089.jpg
Look at the bottom for the white numbers in black circles 20-22.
977 - brake indicator. When the ignition was taken to 'start', it would temporarily illuminate the e-brake lamp to do a bulb test.
I don't know where you got that connector picture from, I'm sure it's right but it's very vague. If you look at this picture, just check the number and the color code and you will be able to see what's what.
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